🦠🧬💻 Project Title

This repository contains scripts and additional data for XYZ.

The manuscript can be found at

Title
B Baggins, G The Gray
bioRxiv 202X.Y; doi: https://doi.org/XYZ

Repository organization

[project root]
├─ step1.rmd      # individual analysis steps
├─ step2.rmd
├─ data           # contains additional and generated data
│  ├─ data.csv
│  ├─ ...
├─ figures        # generated figures
│  ├─ fig1.png
│  └─ ...
└─ docs
   ├─ step1.html  # rendered and executed notebooks
   └─ step2.html

Setup and installation

You will need a working miniforge or miniconda to start. You can follow the installation instructions here. After create an environment with the included conda environment file.

Start by cloning the repository and cd-ing into it.

git clone https://github.com/dienerlab/template
cd template

conda env create -f conda.yml

After that activate the environment.

conda activate template

Reproduce the analysis

1 - Preprocess the data | 📓 notebook | 📊 output

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2 - Run the analysis for Figure 1 | 📓 notebook | 📊 output

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Getting help

For bug reports or feature request please submit an issue.

For general questions or getting help you can open a discussion topic.