Converts BRACKEN results to a phyloseq object.

Converts BRACKEN results to a phyloseq object.

bracken_to_phyloseq(bracken, metadata = NULL, id_col = "sample_id")

Arguments

bracken

A data.table containing the BRACKEN quantifications.

metadata

A metadata in data.table format to use.

id_col

Column in the metdata corresponding to the sample IDs in the BRACKEN counts.

Value

A phyloseq object for the data.

Examples

NULL
#> NULL