Calculate the effective transcript lengths. This is the mean number of positions in the transcript the fragment could map to.

Calculate the effective transcript lengths. This is the mean number of positions in the transcript the fragment could map to.

effective_lengths(txlengths, rdlengths)

Arguments

txlengths

The sequence lengths for each transcript.

rdlengths

The length of all mapped fragments. Mapped length of the read after accounting for mismatches and indels.

Value

The effective lengths.