Merge transcripts into a single database

Merge transcripts into a single database

merge_transcripts(
  transcript_files,
  transcript_folder,
  what = "cdna",
  out = "ensembl_transcripts.fa.gz"
)

Arguments

transcript_files

A data table as returned by download_bacterial_transcripts.

transcript_folder

In which folder to look for transcripts.

what

The type of database, either "cdna" or "protein".

out

The filename for the DB. Will be compressed and saved in the transcript folder.

Value

The transcript counts for each file.