Get the quality profiles and base calls for each cycle across all input files. — quality_profile • miso

Get the quality profiles and base calls for each cycle across all input files.

quality_profile(files, n = 10000)

Arguments

files: A data table containing the files as returned by find_read_files.
n: How many reads to sample from each file. If a file has less all of them will be used.

Value

A list with two data tables giving the sampled metrics per cycle / base pair:

qualities: The quality scores for each cycle and sample.
bases: The base calls for each cycle and sample.