Removes chimeric reads from amplicon sequencing data. — remove_chimeras • miso

It is recommended to run this step after preprocessing which will be a bit more efficient.

remove_chimeras(object, ...)

Arguments

object: An experiment data table as returned by find_read_files or a worflow object.
...: A configuration as returned by config_chimera.

Value

A list containing the workflow results:

passed_reads: How many reads were kept in each step. Rows are samples and columns are workflow steps.
files: Preprocessed sequencing files list.