Calculates what percentage of taxa was found in a reference set.

Source: R/mock.R

Note that both arguments must of class "taxonomyTable" from the phyloseq package which can be obtained with the tax_table method.

taxa_metrics(tax_table, ref)

Arguments

tax_table

Measured taxonomy table.

ref

Reference taxonomy table.

Value

A data frame denoting performance metrics for taxa identification.

Examples

 NULL
#> NULL